Sphingobacterium corticibacter sp. nov., isolated from bark of Populus × euramericana.
Identifieur interne : 000705 ( Main/Exploration ); précédent : 000704; suivant : 000706Sphingobacterium corticibacter sp. nov., isolated from bark of Populus × euramericana.
Auteurs : Yong Li [République populaire de Chine] ; Li-Min Guo [République populaire de Chine] ; Ju-Pu Chang [République populaire de Chine] ; Xu-Qi Yang [République populaire de Chine] ; Shou-Jiang Xie [République populaire de Chine] ; Huan Liu [République populaire de Chine] ; Chun-Gen Piao [République populaire de Chine]Source :
- International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2019.
Descripteurs français
- KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Composition en bases nucléiques (MeSH), Phospholipides (composition chimique), Phylogenèse (MeSH), Populus (microbiologie), Sphingobacterium (classification), Techniques de typage bactérien (MeSH), Vitamine K2 (analogues et dérivés), Vitamine K2 (composition chimique), Écorce (microbiologie).
- MESH :
- analogues et dérivés : Vitamine K2.
- composition chimique : Acides gras, Phospholipides, Sphingobacterium, Vitamine K2.
- génétique : ADN bactérien, ARN ribosomique 16S.
- microbiologie : Populus, Écorce.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Phylogenèse, Techniques de typage bactérien.
- Wicri :
- geographic : République populaire de Chine.
English descriptors
- KwdEn :
- Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Fatty Acids (chemistry), Phospholipids (chemistry), Phylogeny (MeSH), Plant Bark (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Sphingobacterium (classification), Vitamin K 2 (analogs & derivatives), Vitamin K 2 (chemistry).
- MESH :
- chemical , analogs & derivatives : Vitamin K 2.
- chemical , chemistry : Fatty Acids, Phospholipids, Vitamin K 2.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- geographic : China.
- classification : Sphingobacterium.
- microbiology : Plant Bark, Populus.
- Bacterial Typing Techniques, Base Composition, Phylogeny, Sequence Analysis, DNA.
Abstract
One Gram-stain negative, aerobic, non-motile bacterial strain, 2c-3T, was isolated from symptomatic canker bark tissue of Populus × euramericana. It was studied by the genome sequence-derived average nucleotide identity (ANI), phylogenetic analysis based on 16S rRNA gene sequences and phenotypic characteristics. 16S rRNA gene data revealed that the novel isolate shares the greatest sequence similarity to Sphingobacterium populi 7Y-4T (97.0 %). The ANI values between the novel isolate and S. populi 7Y-4T was 81.19 %, lower than the proposed species boundary ANI cut-off (95-96 %). The major fatty acids are iso-C15 : 0, C16 : 1ω7c and iso-C17 : 0 3-OH. The polar lipids of the novel isolate included phosphatidylethanolamine, phospholipid, aminophospholipid and unknown lipids (L1-10). The menaquinone of the novel isolate was MK-7. The DNA G+C content was 41.96 mol %. Based on phenotypic and genotypic characteristics, the isolate represents a novel species within the genus Sphingobacterium, for which the name Sphingobacterium corticibacter is proposed. The type strain is 2c-3T (=CFCC 11898T=KCTC 52798T).
DOI: 10.1099/ijsem.0.003148
PubMed: 31091182
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Guo, Li Min" sort="Guo, Li Min" uniqKey="Guo L" first="Li-Min" last="Guo">Li-Min Guo</name><affiliation wicri:level="1"><nlm:affiliation>2Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Puyang Academy of Forestry, Puyang 457000</wicri:regionArea><wicri:noRegion>Puyang 457000</wicri:noRegion></affiliation></author><author><name sortKey="Chang, Ju Pu" sort="Chang, Ju Pu" uniqKey="Chang J" first="Ju-Pu" last="Chang">Ju-Pu Chang</name><affiliation wicri:level="1"><nlm:affiliation>2Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Puyang Academy of Forestry, Puyang 457000</wicri:regionArea><wicri:noRegion>Puyang 457000</wicri:noRegion></affiliation></author><author><name sortKey="Yang, Xu Qi" sort="Yang, Xu Qi" uniqKey="Yang X" first="Xu-Qi" last="Yang">Xu-Qi Yang</name><affiliation wicri:level="1"><nlm:affiliation>2Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Puyang Academy of Forestry, Puyang 457000</wicri:regionArea><wicri:noRegion>Puyang 457000</wicri:noRegion></affiliation></author><author><name sortKey="Xie, Shou Jiang" sort="Xie, Shou Jiang" uniqKey="Xie S" first="Shou-Jiang" last="Xie">Shou-Jiang Xie</name><affiliation wicri:level="1"><nlm:affiliation>2Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Puyang Academy of Forestry, Puyang 457000</wicri:regionArea><wicri:noRegion>Puyang 457000</wicri:noRegion></affiliation></author><author><name sortKey="Liu, Huan" sort="Liu, Huan" uniqKey="Liu H" first="Huan" last="Liu">Huan Liu</name><affiliation wicri:level="1"><nlm:affiliation>2Puyang Academy of Forestry, Puyang 457000, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>2Puyang Academy of Forestry, Puyang 457000</wicri:regionArea><wicri:noRegion>Puyang 457000</wicri:noRegion></affiliation></author><author><name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name><affiliation wicri:level="1"><nlm:affiliation>1The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>1The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">International journal of systematic and evolutionary microbiology</title><idno type="eISSN">1466-5034</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Bacterial Typing Techniques (MeSH)</term><term>Base Composition (MeSH)</term><term>China (MeSH)</term><term>DNA, Bacterial (genetics)</term><term>Fatty Acids (chemistry)</term><term>Phospholipids (chemistry)</term><term>Phylogeny (MeSH)</term><term>Plant Bark (microbiology)</term><term>Populus (microbiology)</term><term>RNA, Ribosomal, 16S (genetics)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Sphingobacterium (classification)</term><term>Vitamin K 2 (analogs & derivatives)</term><term>Vitamin K 2 (chemistry)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN bactérien (génétique)</term><term>ARN ribosomique 16S (génétique)</term><term>Acides gras (composition chimique)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Chine (MeSH)</term><term>Composition en bases nucléiques (MeSH)</term><term>Phospholipides (composition chimique)</term><term>Phylogenèse (MeSH)</term><term>Populus (microbiologie)</term><term>Sphingobacterium (classification)</term><term>Techniques de typage bactérien (MeSH)</term><term>Vitamine K2 (analogues et dérivés)</term><term>Vitamine K2 (composition chimique)</term><term>Écorce (microbiologie)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analogs & derivatives" xml:lang="en"><term>Vitamin K 2</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Fatty Acids</term><term>Phospholipids</term><term>Vitamin K 2</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Bacterial</term><term>RNA, Ribosomal, 16S</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>China</term></keywords><keywords scheme="MESH" qualifier="analogues et dérivés" xml:lang="fr"><term>Vitamine K2</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Sphingobacterium</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Acides gras</term><term>Phospholipides</term><term>Sphingobacterium</term><term>Vitamine K2</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN bactérien</term><term>ARN ribosomique 16S</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Populus</term><term>Écorce</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Bark</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Bacterial Typing Techniques</term><term>Base Composition</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Chine</term><term>Composition en bases nucléiques</term><term>Phylogenèse</term><term>Techniques de typage bactérien</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>République populaire de Chine</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">One Gram-stain negative, aerobic, non-motile bacterial strain, 2c-3<sup>T</sup>, was isolated from symptomatic canker bark tissue of Populus × euramericana. It was studied by the genome sequence-derived average nucleotide identity (ANI), phylogenetic analysis based on 16S rRNA gene sequences and phenotypic characteristics. 16S rRNA gene data revealed that the novel isolate shares the greatest sequence similarity to Sphingobacterium populi 7Y-4<sup>T</sup> (97.0 %). The ANI values between the novel isolate and S. populi 7Y-4<sup>T</sup> was 81.19 %, lower than the proposed species boundary ANI cut-off (95-96 %). The major fatty acids are iso-C15 : 0, C16 : 1ω7c and iso-C17 : 0 3-OH. The polar lipids of the novel isolate included phosphatidylethanolamine, phospholipid, aminophospholipid and unknown lipids (L1-10). The menaquinone of the novel isolate was MK-7. The DNA G+C content was 41.96 mol %. Based on phenotypic and genotypic characteristics, the isolate represents a novel species within the genus Sphingobacterium, for which the name Sphingobacterium corticibacter is proposed. The type strain is 2c-3<sup>T</sup> (=CFCC 11898<sup>T</sup>=KCTC 52798<sup>T</sup>).</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">31091182</PMID><DateCompleted><Year>2019</Year><Month>07</Month><Day>08</Day></DateCompleted><DateRevised><Year>2019</Year><Month>07</Month><Day>08</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1466-5034</ISSN><JournalIssue CitedMedium="Internet"><Volume>69</Volume><Issue>7</Issue><PubDate><Year>2019</Year><Month>Jul</Month></PubDate></JournalIssue><Title>International journal of systematic and evolutionary microbiology</Title><ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation></Journal><ArticleTitle>Sphingobacterium corticibacter sp. nov., isolated from bark of Populus × euramericana.</ArticleTitle><Pagination><MedlinePgn>1870-1874</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1099/ijsem.0.003148</ELocationID><Abstract><AbstractText>One Gram-stain negative, aerobic, non-motile bacterial strain, 2c-3<sup>T</sup>, was isolated from symptomatic canker bark tissue of Populus × euramericana. It was studied by the genome sequence-derived average nucleotide identity (ANI), phylogenetic analysis based on 16S rRNA gene sequences and phenotypic characteristics. 16S rRNA gene data revealed that the novel isolate shares the greatest sequence similarity to Sphingobacterium populi 7Y-4<sup>T</sup> (97.0 %). The ANI values between the novel isolate and S. populi 7Y-4<sup>T</sup> was 81.19 %, lower than the proposed species boundary ANI cut-off (95-96 %). The major fatty acids are iso-C15 : 0, C16 : 1ω7c and iso-C17 : 0 3-OH. The polar lipids of the novel isolate included phosphatidylethanolamine, phospholipid, aminophospholipid and unknown lipids (L1-10). The menaquinone of the novel isolate was MK-7. The DNA G+C content was 41.96 mol %. Based on phenotypic and genotypic characteristics, the isolate represents a novel species within the genus Sphingobacterium, for which the name Sphingobacterium corticibacter is proposed. The type strain is 2c-3<sup>T</sup> (=CFCC 11898<sup>T</sup>=KCTC 52798<sup>T</sup>).</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Yong</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>1The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Li-Min</ForeName><Initials>LM</Initials><AffiliationInfo><Affiliation>2Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chang</LastName><ForeName>Ju-Pu</ForeName><Initials>JP</Initials><AffiliationInfo><Affiliation>2Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Xu-Qi</ForeName><Initials>XQ</Initials><AffiliationInfo><Affiliation>2Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xie</LastName><ForeName>Shou-Jiang</ForeName><Initials>SJ</Initials><AffiliationInfo><Affiliation>2Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Huan</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>2Puyang Academy of Forestry, Puyang 457000, PR China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Piao</LastName><ForeName>Chun-Gen</ForeName><Initials>CG</Initials><AffiliationInfo><Affiliation>1The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>05</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Int J Syst Evol Microbiol</MedlineTA><NlmUniqueID>100899600</NlmUniqueID><ISSNLinking>1466-5026</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010743">Phospholipids</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical><Chemical><RegistryNumber>11032-49-8</RegistryNumber><NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance></Chemical><Chemical><RegistryNumber>8427BML8NY</RegistryNumber><NameOfSubstance UI="C062629">vitamin MK 7</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N" Type="Geographic">China</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010743" MajorTopicYN="N">Phospholipids</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D045249" MajorTopicYN="N">Sphingobacterium</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName><QualifierName UI="Q000031" MajorTopicYN="N">analogs & derivatives</QualifierName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Populus × euramericana</Keyword><Keyword MajorTopicYN="N">Sphingobacterium</Keyword><Keyword MajorTopicYN="N">average nucleotide identity</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>5</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>7</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>5</Month><Day>16</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31091182</ArticleId><ArticleId IdType="doi">10.1099/ijsem.0.003148</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name></noRegion><name sortKey="Chang, Ju Pu" sort="Chang, Ju Pu" uniqKey="Chang J" first="Ju-Pu" last="Chang">Ju-Pu Chang</name><name sortKey="Guo, Li Min" sort="Guo, Li Min" uniqKey="Guo L" first="Li-Min" last="Guo">Li-Min Guo</name><name sortKey="Liu, Huan" sort="Liu, Huan" uniqKey="Liu H" first="Huan" last="Liu">Huan Liu</name><name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name><name sortKey="Xie, Shou Jiang" sort="Xie, Shou Jiang" uniqKey="Xie S" first="Shou-Jiang" last="Xie">Shou-Jiang Xie</name><name sortKey="Yang, Xu Qi" sort="Yang, Xu Qi" uniqKey="Yang X" first="Xu-Qi" last="Yang">Xu-Qi Yang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:31091182" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |